Johann Pellet

Bioinformatics Consultant

My scientific background is characterized by a sound education and experience at the interface of Biology and Informatics. My research activity, mainly specialized in the management and analysis of genomic and post-genomic data, is oriented toward the testing of biological hypothesis at different system scales (genome, transcriptome, proteome, interactome).

Keywords

Computational biologist, eHealth, Web2.0, Personalized Medicine, Systems Medicine

Projects

Education

  • 2005 – M.Sc. Bioinformatics, Montpellier II University
  • 2004 – Erasmus internship Biochemistry, Oulu University (Finland)
  • 2004 – B.Sc. Biochemistry, Montpellier II University

Areas of Expertise/Interest

  • Omics data analysis and integration using a systemic approach
  • Information and communication technology support
  • Web developmment and server administration
  • Project management

Selected publications

  • Saqi M, Pellet J, Roznovat I, Mazein A, Ballereau S, De Meulder B, Auffray C. Systems Medicine: The Future of Medical Genomics, Healthcare, and Wellness. Methods Mol Biol. 2016;1386:43-60. doi: 10.1007/978-1-4939-3283-2_3. PubMed PMID: 26677178.
  • Georgatos F, Ballereau S, Pellet J, Ghanem M, Price N, Hood L, et al. Computational Infrastructures for Data and Knowledge Management in Systems Biology. In: Prokop A, Csukás B, editors. Systems Biology. Springer Netherlands; 2013 [cited 2014 Mar 27]. p. 377–97. Available from: http://link.springer.com.gate1.inist.fr/chapter/10.1007/978-94-007-6803-1_13
  • Cassonnet P, Rolloy C, Neveu G, Vidalain P-O, Chantier T, Pellet J, et al. Benchmarking a luciferase complementation assay for detecting protein complexes. Nat. Methods. 2011;8:990–2.
  • Pellet J, Tafforeau L, Lucas-Hourani M, Navratil V, Meyniel L, Achaz G, et al. ViralORFeome: an integrated database to generate a versatile collection of viral ORFs. Nucleic Acids Res. 2010;38:D371–8.
  • Pellet J, Meyniel L, Vidalain P-O, de Chassey B, Tafforeau L, Lotteau V, et al. pISTil: a pipeline for yeast two-hybrid Interaction Sequence Tags identification and analysis. BMC Res Notes. 2009;2:220.
  • de Chassey B, Navratil V, Tafforeau L, Hiet MS, Aublin-Gex A, Agaugué S, Meiffren G, Pradezynski F, Faria BF, Chantier T, Le Breton M, Pellet J, Davoust N, Mangeot PE, Chaboud A, Penin F, Jacob Y, Vidalain PO, Vidal M, André P, Rabourdin-Combe C, Lotteau V: Hepatitis C virus infection protein network. Mol Syst Biol 2008, 4:230.
Johann Pellet
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